Craving a sweet yet healthy treat? These pumpkin chocolate chip protein muffins are fluffy, chocolatey, and packed with protein. Ready in 30 minutes, they’re perfect for Halloween, meal prep, or cozy fall mornings.

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Why You’ll Love These Pumpkin Chocolate Chip Protein Muffins
These pumpkin chocolate chip protein muffins bring together the best of both worlds: indulgence and nutrition. Unlike traditional muffins, which often load up on sugar and butter, pumpkin chocolate chip protein muffins stay naturally sweetened and protein-packed. Each bite delivers rich pumpkin flavor, warm spices, and melty chocolate chips, while staying low in sugar and high in fiber. With 7 grams of protein per muffin, they’re a smart option for breakfast, a post-workout snack, or even a healthy dessert.
You’ll also love how simple they are to prepare. Everything mixes up in a blender, so cleanup stays easy. They’re freezer-friendly, too, which means you can bake a batch now and enjoy them for weeks. Plus, kids and adults both approve—especially when you sprinkle extra chocolate chips on top. Whether you’re planning a festive Halloween party or need a quick on-the-go snack, these muffins deliver both flavor and function.
For more Halloween treats, you might also enjoy other Halloween recipes.
Ingredients You’ll Need
Core Ingredients
Rolled oats act as the base here, providing whole-grain fiber and texture once blended into flour. Pumpkin puree not only brings seasonal flavor but also keeps the muffins moist. Greek yogurt adds creaminess and boosts the protein count. Eggs give structure and hold everything together. Vanilla protein powder adds an extra punch of nutrition while enhancing sweetness. Pumpkin pie spice and cinnamon give that classic fall aroma, while baking powder and baking soda create a light, fluffy rise. A pinch of sea salt balances the flavors. Finally, chocolate chips add indulgent sweetness in every bite.
Ingredient Notes and Tips
If you’re gluten-sensitive, choose certified gluten-free oats. Both whey and plant-based protein powders work, but collagen won’t—since it lacks the structure needed for baking. If you don’t have vanilla protein powder, you can add an extra 1/3–1/2 cup oats instead. When it comes to chocolate, you have options: dark for richness, semi-sweet for balance, or mini chips for extra distribution. For a prettier finish, stir in some chips and sprinkle the rest on top before baking.
Step-by-Step Instructions
Blend the Batter
Start by preheating your oven to 350°F. Place rolled oats in a blender and pulse until they resemble fine flour. Add pumpkin puree, Greek yogurt, eggs, protein powder, spices, baking powder, baking soda, and salt. Blend until smooth and creamy, scraping down the sides if needed.
Add the Chocolate Chips
Once the batter is smooth, gently fold in half a cup of chocolate chips by hand. This keeps them from breaking apart. Save a small handful to sprinkle over the top for a bakery-style finish.

Bake to Perfection
Grease or line a 12-cup muffin tin. Divide the batter evenly, filling each cup about three-quarters full. Sprinkle remaining chocolate chips on top. Bake for 25–30 minutes. At 25 minutes, the muffins will be softer and more moist; at 30 minutes, they’ll be firmer. Test doneness with a toothpick—if it comes out clean, they’re ready.

Cool and Enjoy
Allow muffins to cool in the pan for a few minutes before transferring them to a wire rack. This helps prevent sticking to liners and keeps their texture just right. Once cooled, enjoy them fresh or save for later.
Recipe Variations and Substitutions
These muffins are versatile and forgiving. Swap Greek yogurt with non-dairy yogurt or cottage cheese for different textures. For an egg-free option, use flax eggs. If you’d rather skip protein powder, replace it with extra oats. To switch up flavors, fold in chopped walnuts or pecans for crunch, or mix in dried cranberries for a tart contrast. A drizzle of almond or peanut butter on top makes them even more satisfying. You can also use mini chocolate chips for extra sweetness in every bite.
Storage and Freezing Tips
Keep these muffins fresh by storing them in the fridge for 3–4 days. Place them in an airtight container to maintain moisture. If you want to save some for later, freeze them individually wrapped or in a freezer-safe bag. They’ll keep for up to three months. To reheat, simply microwave for 20–30 seconds or warm in the oven at 300°F for about 5 minutes. This brings back that fresh-from-the-oven taste.
Gluten-Free Pumpkin Protein Muffins
To make these muffins fully gluten-free, use certified gluten-free oats. Since the oats are blended into flour, the texture stays the same while making the recipe safe for anyone with celiac disease or gluten sensitivity. This way, everyone can enjoy these muffins worry-free during fall gatherings, Halloween parties, or simple family breakfasts.
Conclusion
Pumpkin chocolate chip protein muffins are a healthy, cozy, and family-friendly treat you’ll want on repeat all season. They’re quick to make, packed with protein, and full of warm fall flavors. With melty chocolate chips and fluffy texture, these pumpkin chocolate chip protein muffins are perfect for Halloween, meal prep, or a guilt-free dessert. Try baking a batch today and see why pumpkin chocolate chip protein muffins are a recipe you’ll keep coming back to. If you loved this recipe, be sure to check out more Halloween recipes, explore more recipes, or browse our recent posts. You can also follow along on Pinterest for even more healthy and festive baking ideas.


Pumpkin Chocolate Chip Protein Muffins
Equipment
- Blender For blending oats into flour and mixing the batter
- Muffin tin 12-cup standard size
- Mixing spoon or spatula For folding in chocolate chips
- Oven Preheated to 350°F
Ingredients
- 1 cup old fashioned rolled oats (100g)
- 1 cup pumpkin puree (244g)
- 1 cup Greek yogurt (227g, such as Siggi’s 0%)
- 2 large eggs
- ½ packed cup vanilla flavored protein powder (50–60g)
- 1 tbsp pumpkin pie spice
- 1 tsp cinnamon
- 1 tsp baking powder
- ½ tsp baking soda
- pinch sea salt
- ½ cup dark chocolate chips
Instructions
- Preheat oven to 350°F. Blend rolled oats into flour in a blender.
- Add pumpkin puree, Greek yogurt, eggs, protein powder, spices, baking powder, baking soda, and salt to blender. Blend until smooth.
- Gently fold in chocolate chips, reserving some for topping.
- Divide batter evenly into 12 greased or lined muffin cups. Sprinkle remaining chips on top.
- Bake for 25–30 minutes, until a toothpick inserted comes out clean.
- Cool in the pan for a few minutes, then transfer to a rack. Enjoy once cooled.
